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l L. Hua,Ruhong Zhou, D. Thirumalai, B. J. Berne*, Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding, Proc. Natl. Acad. Sci., 105, 16928-16933, 2008 (featured article)
l M. G. Krone, L. Hua, P. Soto, Ruhong Zhou, B. J. Berne, and J-E. Shea*, Role of Water in Mediating the Assembly of AlzheimerAmyloid-betaAb16-22 Protofilaments,J. Am. Chem. Soc.130, 11066-11072, 2008
l L. Ye, T. Liu, Z. Wu, and Ruhong Zhou*, Sequence-based protein domain boundary prediction using BP neural network with various property profiles, Proteins 71, 300-307, 2008
l Ruhong Zhou*, P. Das, A. K. Royyuru, Single Mutation Induced H3N2 Hemagglutinin Antibody Neutralization: A Free Energy Perturbation Study, Cover article, J. Phys. Chem. B 112, 15813-15820, 2008
l Ruhong Zhou, M. Eleftheriou, C.-C. Hon, R. S. Germain, A. K. Royyuru, and B. J. Berne*, Massively parallel molecular dynamics simulations of lysozyme unfolding,IBM J. Res. Dev. 52, 19-30, 2008