l   J. Li, X. Gong, H. Lu, D. Li, H. Fang* and Ruhong Zhou*, Electrostatic Gating of a Nanometer Water Channel, Proc. Natl. Acad. Sci.,104, 3687-3692, 2007

l  Ruhong Zhou*, M. Eleftheriou, A. Royyuru, B. J. Berne*, Destruction of long-range interactions by a single mutation in lysozyme,Proc. Natl. Acad. Sci.,104, 5824-5829, 2007

l  Ruhong Zhou, L. Parida, K. Kapila, and S. Mudur, PROTERAN: Animated Terrain Evolution for Visual Analysis of Patterns in Protein Folding Trajectory,Bioinformatics, 23, 99-106, 2007

l  X. Huang, M. Hagen, B. Kim, R. A. Friesner, Ruhong Zhou, and B. J. Berne*, Replica Exchange with Solute Tempering: Efficiency in Large Scale Systems,J. Phys. Chem. B 111, 5405-5410, 2007

l  Ruhong Zhou, Replica Exchange Molecular Dynamics Method for Protein Folding, Methods Mol. Biol. 350, Protein Folding Protocols, 205-223, 2007

l  L. Hua, X. Huang*, P. Liu, Ruhong Zhou, and B. J. Berne*, Nanoscale Dewetting Transition in Protein Complex Folding,J. Phys. Chem. B 111, 9069-9077, 2007

l   J. Li, Z. Yang, H. Fang*, Ruhong Zhouand X. Tang*, Effect of the Carbon Nanotube Length on the Water Permeability, Chinese Phys. Lett. 24, 2710-2713, 2007

l  L. Ye, Z. Wu, M. Eleftheriou, and Ruhong Zhou*, Single-mutation-induced stability loss in protein lysozyme, Biochem. Soc. Trans. 35, 1551-1557, 2007