l   P. Liu, X. Huang, Ruhong Zhou*and B. J. Berne*, Observation of a dewetting transition in the collapse of melittin tetramer, Nature, 437, 159-162, 2005

l   J. Li, Y. Lei, T. Liu, Z. Wu, and Ruhong Zhou*, Water hydration near graphite-CH3 and graphite-COOH plates, J. Phys. Chem. B. 109, 13639-13648, 2005

l  X. Huang, Ruhong Zhouand B. J. Berne*, Drying and Hydrophobic Collapse of Paraffin Plates, J. Phys. Chem. B. 109, 3546-3552, 2005

l  L. Parida and Ruhong Zhou,Combinatorial Pattern Discovery for Protein Folding Trajectory Analysis, PLoS Comp. Biol., 1, 32-40, 2005

l  L. Ye, J. Li, T. Liu, Z. Wu andRuhong Zhou*, Wavelets approach for protein trajectory analysis, J. Bioinfo. Comp. Biol. 3, 1351-1370, 2005